SRD's RNAseq transcribed sRNA

Number of SRD's RNAseq transcribed srn = 235
SRD identifier Most common nameOther names Experimental evidence Molecular targetssRNA structure Sequences conservation sRNA Category sRNA function Internal coding capacity Author References
4.5S4.5S4.5S_ffs_IGRLF1_WAN01CBPQ_Teg42_sRNA98Northern_Blotconserved_in_StaphylococcusProtein-binding_RNASignal_recognition_particle_RNAPichon_et_Felden._2005,_Roberts_et_al.2006_and_Beaume_et_al.2010
6S6SssrS_ssr80_IGR2_6S_WAN01CC8T_Teg97_sRNA256RNAseqconserved_in_StaphylococcusPredictedBeaume_et_al.2010,_Roberts_et_al.2006,sprA2_and_Howden_BP_et_al.2013
RNasePRNAsePRseP_rnp_sRNA240_IGR1215Northern_Blotconserved_in_Staphylococcus_and_predicted_in_Some_Gram_positive_BacteriaProtein-binding_RNARibozymePichon_et_Felden._2005_and_Howden_BP_et_al.2013
srn_0030Teg35Teg35_sRNA2RT-qPCRconserved_in_StaphylococcusPredicted_RiboswitchPutative_T-box_uptream_of_serSBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0050Teg1Teg1_sRNA3RT-qPCRconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0060Sau65Sau65Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_0200Teg4Teg4_sRNA11RT-qPCRconserved_in_StaphylococcusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0220sRNA261sRNA261RNAseqconserved_in_S._aureus_and_predicted_in_S._epidermidis_RP62AHowden_BP_et_al.2013
srn_0260Teg15asTeg15as_sRNA14RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0275tsr6tsr6RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusCarroll_et_al._2016
srn_0280sRNA16sRNA16RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_0310Sau6873Sau6873RNAseqconserved_in_S._aureusAbu-Qatouseh_et_al._2010
srn_0440rsaKRsaK_Teg38_sRNA27Northern_Blot,_RT-qPCRconserved_in_S._aureusPutative_glcA_leaderGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0455tsr9tsr9RNAseqconserved_in_S._aureusCarroll_et_al._2016
srn_0510rsaGRsaG_Teg93_sRNA31Northern_Blotconserved_in_S._aureusGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0560Sau6009Sau6009RNAseqconserved_in_S._aureusPredictedAbu-Qatouseh_et_al._2010
srn_0590sRNA37sRNA37RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_0760sRNA51sRNA51RNAseqconserved_in_S._aureus_and_predicted_in S_argenteuscis-acting_regulator_AntisensePredictedHowden_BP_et_al.2013
srn_0770Teg18asTeg18as_sRNA53RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0795srn_0795srn_0795RT-PCRconserved_in_S._aureusPredictedBronsard_et_al.2017
srn_0800sRNA55sRNA55RNAseqconserved_in_S._aureuscis-acting_regulatorPredictedHowden_BP_et_al.2013
srn_0860RsaOBRsaOB_Teg40_sRNA61Northern_Blotconserved_in_StaphylococcusPredictedAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010,_Howden_BP_et_al.2013_and_Howden_BP_et_al.2013
srn_0870Teg38asTeg38as_sRNA63RNAseqconserved_in_S._aureus_and_predicted_in_S_haemolyticus_JCSC1435_and_Some_Gram_positive_BacteriaBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0880Sau5971Sau5971Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_0910sRNA73sRNA73RNAseqconserved_in_S._aureustrans-encoded_RNAPredictedHowden_BP_et_al.2013
srn_0930Teg76sRNA74_Teg76RT-qPCRconserved_in_S._aureusPredicted_RiboswitchPredicted_purine_riboswitch_upstream_of_xprTBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0950Sau63Sau63_Teg146_sRNA83Northern_Blotconserved_in_S._aureusPredicted_RiboswitchPredicted_S-box-SAM_riboswitchAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0960Teg147Teg147_sRNA85RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_0990sRNA87sRNA87RNAseqconserved_in_S._aureustrans-encoded_RNA_AntisensePredictedHowden_BP_et_al.2013
srn_1000sRNA88sRNA88RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_1015tsr12tsr12RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_1020sRNA90sRNA90RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_1060Teg149Teg149_sRNA94RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1070Sau41Sau41Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_1080RsaX05RsaX05_Teg41_sRNA95RNAseqconserved_in_S._aureusGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1095tsr13tsr13RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_1140Sau82Sau82RNAseqconserved_in_StaphylococcusPredictedAbu-Qatouseh_et_al._2010
srn_1170sRNA103sRNA103RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_1210sRNA106sRNA106RNAseqconserved_in_StaphylococcusPredictedHowden_BP_et_al.2013
srn_1350Teg45Teg45_sRNA120RT-qPCRconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1460sRNA128sRNA128RNAseqconserved_in_Staphylococcus_and_predicted_in_Some_Gram_positive_BacteriaHowden_BP_et_al.2013
srn_1490Sau6477RsaOI_Sau6477_Teg47_sRNA131Northern_Blotconserved_in_S._aureusBohn_et_al.2010,_Abu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1505S204S204Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteusTranscriptMader_et_al._2016
srn_1510rsaARsaA_rsaOJ_sau64_Teg88_sRNA132Northern_BlotmgrA_mRNAGeismann_et_al,_2009conserved_in_S._aureusTrans-acting_RNAInvolved_in_virulence,_Downregulates_MgrAGeissmann_T_et_al.2009,_Bohn_et_al.2010,_Abu-Qatouseh_et_al.2010,_Beaume_et_al.2010,_Howden_BP_et_al.2013_and_Romilly_et_al_2014
srn_1520Sau76Sau76RNAseqconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_1550Teg49Teg49_sRNA134RNAseqconserved_in_S._aureusBeaume_et_al.2010,_Howden_BP_et_al.2013_and_Kim_S_et_al.2014
srn_1570RsaOW2RsaOW2_Teg98Northern_Blotconserved_in_S._aureusBohn_et_al.2010,_and_Beaume_et_al.2010
srn_1580sbrCSbrCNorthern_Blotconserved_in_S._aureusSigma-B_dependent_RNANielsen_et_al.2010
srn_1590rsaCrsaC_Teg90_sRNA135RNAseqconserved_in_S._aureusPredictedGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1640rsaDrsaD_Teg91_sRNA138RNAseqconserved_in_StaphylococcusGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1670Teg20asTeg20as_sRNA141RNAseqconserved_in_S._aureus_and_predicted_in_S._warneri_SG1PredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1720sRNA146sRNA146RNAseqconserved_in_Staphylococcuscis-acting_regulatorPredictedHowden_BP_et_al.2013
srn_1730Sau7006Sau7006RNAseqconserved_in_Staphylococcus_aureus_and_predicted_in_some_Bacillus_speciesPredictedAbu-Qatouseh_et_al._2010
srn_1760sRNA149sRNA149RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_1770rsaOCRsaOC_RsaX08_Teg50Northern_Blotconserved_in_S._aureusPredicted_RiboswitchPredicted_pre-Q1_riboswitch_upstream_from_SA0668Marchais_et_al.2009,_Bohn_et_al.2010_and_Beaume_et_al.2010
srn_1780Sau66Sau66Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_1800sRNA151sRNA151RNAseqconserved_in_S._aureustrans-encoded_RNAPredictedHowden_BP_et_al.2013
srn_1810Teg51Teg51_sRNA152RNAseqconserved_in_S._aureusPredicted_RiboswitchPredicted_purine_riboswitch_upstream_of_nrdlPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1900Sau15Sau15Northern_Blotconserved_in_S._aureusPredictedAbu-Qatouseh_et_al.2010
srn_1910rsaHIGR7_rsaH_rsaOK_sau6059_Teg94_sRNA162RNAseqconserved_in_S._aureusGeissmann_T_et_al.2009,_Marchais_et_al.2009,_Bohn_et_al.2010,_Abu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_1930.1rsaOFrsaOF_Teg12RNAseqconserved_in_S._aureusMarchais_et_al.2009_and_Beaume_et_al.2010
srn_1930.2rsaOFrsaOF_Teg12RNAseqconserved_in_S._aureusPredictedMarchais_et_al.2009_and_Beaume_et_al.2010
srn_1930.5rsaOFrsaOF_Teg12RNAseqconserved_in_S._aureusMarchais_et_al.2009_and_Beaume_et_al.2010
srn_1980sRNA169sRNA169RNAseqconserved_in_S._aureus_and_predicted_in S_argenteuscis-acting_regulatorPredictedHowden_BP_et_al.2013
srn_1990Teg40asTeg40as_sRNA170RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2000Sau81Sau81RNAseqconserved_in_S._aureusPredictedAbu-Qatouseh_et_al._2010
srn_2035tsr15tsr15RNAseqconserved_in_S._aureustrans-encoded_RNA_AntisenseCarroll_et_al._2016
srn_2055tsr16tsr16RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_2058srn_2058srn_2058RT-PCRconserved_in_S._aureusBronsard_et_al.2017
srn_2070Sau6851Teg53_Sau6851RNAseqconserved_in_S._aureusPredictedAbu-Qatouseh_et_al._2010_and_Beaume_et_al._2010
srn_2125tsr17tsr17RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusPredictedCarroll_et_al._2016
srn_2130rsaERsaE_sRNA183_RsaON_Sau20_Teg92_IGR6Northern_BlotSa0873,_opp3A,_opp3B,_sucD_mRNAsGeismann_et_al,_2009conserved_in_Staphylococcus_and_predicted_in_Some_Gram_positive_BacilliTrans-acting_RNACentral_metabolism_regulator;_TCA_cycle_and_amino_acid uptakeGeissmann_T_et_al.2009,_Abu-Qatouseh_et_al.2010,_Bohn_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2200Sau6053Sau6053_Teg78_sRNA189Northern_Blotconserved_in_S._aureusPredictedAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2230sprG2SprG2Northern_Blot_RT-qPCRconserved_in_S._aureusPredicted_Type_I_Toxin-antitoxin_modulePredictedPinel-Marie_et_al.2014
srn_2240sprF2Sau02_Teg19a_Teg102_sRNA190_SprF2Northern_Blotconserved_in_S._aureusPredicted_Type_I_Toxin-antitoxin_moduleAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010,_Howden_BP_et_al.2013_and_Pinel-Marie_et_al.2014_
srn_2250sprG4SprG4Northern_Blot_RT-qPCRconserved_in_S._aureusPredicted_Type_I_Toxin-antitoxin_modulePinel-Marie_et_al.2014
srn_2260sprF4Sau02_Teg19a_Teg102_sRNA191_sprF4Northern_Blotconserved_in_S._aureusPredicted_Type_I_Toxin-antitoxin_moduleAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010 ,_Howden_BP_et_al.2013_and_Pinel-Marie_et_al.2014
srn_2290sbrASbrA_RsaOO_Teg54_sRZNNorthern_Blotconserved_in_S._aureusPeptide-encoding_RNAYESBohn_et_al.2010,_Nielsen_et_al.2010_and_Beaume_et_al.2010
srn_2330Sau11Sau11_Teg79_sRNA196RNAseqconserved_in_S._aureus_and_predicted_in_Leuconostoc_mesenteroides_and_Francisella_sp.Abu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2335tsr18srn_2335_tsr18Northern_Blotconserved_in_S._aureusPredictedCarroll_et_al._2016_Bronsard_et_al.2017
srn_2340Sau59Sau59Northern_Blotconserved_in_S._aureus_and_predicted_in_S._lugdunensisAbu-Qatouseh_et_al.2010
srn_2345tsr19tsr19RNAseqconserved_in_S._aureusCarroll_et_al._2016
srn_2347srn_2347srn_2347Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteusPredictedBronsard_et_al.2017
srn_2348srn_2348srn_2348RT-PCRconserved_in_S._aureus_and_predicted_in S_argenteustrans-encoded_RNA_AntisenseBronsard_et_al.2017
srn_2400Teg37asTeg37asRNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010
srn_2410Sau6524Sau6524RNAseqconserved_in_S._aureusPredictedAbu-Qatouseh_et_al.2010
srn_2450Sau6229Sau6229_Teg57_sRNA204RNAseqconserved_in_S._aureusAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2460Teg58Teg58RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010
srn_2467srn_2467srn_2467RT-PCRconserved_in_S._aureustrans-encoded_RNA_AntisenseBronsard_et_al.2017
srn_2468srn_2468srn_2468RT-PCRconserved_in_S._aureusBronsard_et_al.2017
srn_2500sRNA207sRNA207RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_2520Teg60Teg60_sRNA208_tsr22RNAseqconserved_in_S._aureusTrans-encoded_sRNAsBeaume_et_al._2010
srn_2520Teg60Teg60_sRNA208RT-qPCRconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2530sRNA209sRNA209RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_2540sRNA210sRNA210RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_2550Teg80Teg80_sRNA211RNAseqconserved_in_S._aureusPredicted_RiboswitchPredicted_T-box_uptream_of_ileSBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2560sRNA212sRNA212RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_2580Teg103Teg103_sRNA214RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2610Sau24Sau24_Teg81Northern_Blotconserved_in_S._aureus_and_predicted_in_S._saprophyticus_ATCC_15305Abu-Qatouseh_et_al.2010_and_Beaume_et_al.2010
srn_2660sRNA219sRNA219RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_2690Sau27Sau27RNAseqconserved_in_S._aureusTrans-encoded_sRNAsAbu-Qatouseh_et_al._2010
srn_2740Teg108Teg108_sRNA222RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2830SbrBSbrB_Teg111Northern_Blotconserved_in_S._aureusPeptide-encoding_RNAYESNielsen_et_al.2010_and_Beaume_et_al.2010
srn_2880RsaOQIGR23_RsaOQ_Teg82_sRNA230Northern_Blotconserved_in_Staphylococcus_and_predicted_in_Lactobacillus_caseiBohn_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2950Teg6Teg6_sRNA234RNAseqconserved_in_S._aureus_and_predicted_in_S._epidermidisPredicted_RiboswitchPredicted_Lysine_riboswitch_upstream_of_lysCBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_2970sRNA235sRNA235RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_2975tsr25tsr25_S596Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteus_and_S_haemolyticusCarroll_et_al._2016
srn_3020Teg65Teg65_sRNA241RNAseqconserved_in_S._aureus_and_predicted_in_S._pasteuri_SP1Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3040Sau50Sau50Northern_Blotconserved_in_StaphylococcusPredictedAbu-Qatouseh_et_al.2010
srn_3050sRNA242sRNA242RNAseqconserved_in_StaphylococcusPredictedHowden_BP_et_al.2013
srn_3110Sau6353Sau6353_sRNA247RNAseqconserved_in_S._aureusAbu-Qatouseh_et_al.2010_and_Howden_BP_et_al.2013
srn_3140Teg151Teg151RNAseqconserved_in_S._aureusBeaume_et_al.2010
srn_3185tsr28tsr28RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_3190Teg68Teg68_sRNA252RNAseqconserved_in_S._aureusPredicted_RiboswitchPredicted_T-box_uptream_of_alaSPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3210sRNA254sRNA254RNAseqconserved_in_StaphylococcusHowden_BP_et_al.2013
srn_3260Teg69Teg69_sRNA25RT-qPCRconserved_in_S._aureusPredicted_RiboswitchPredicted_T-box_uptream_of_hisSBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3270sRNA259sRNA259RNAseqconserved_in_S._aureus_and_predicted_in S_argenteuscis-acting_regulatorPredictedHowden_BP_et_al.2013
srn_3280sRNA260sRNA260RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_3300Teg70Teg70_sRNA262RT-qPCRconserved_in_S._aureusPredicted_RiboswitchPredicted_T-box_uptream_of_valSPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3320sRNA264sRNA264RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_3350sRNA266sRNA266RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_3360sRNA267sRNA267RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_3390Teg7Teg7_sRNA268RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3460Sau5949Sau5949_Teg120_sRNA272Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3490RsaOERsaOE_Teg73Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010,_Beaume_et_al.2010,_Howden_BP_et_al.2013_and_Howden_BP_et_al.2013
srn_3520sRNA279sRNA279RNAseqconserved_in_S._aureus_and_S_xylosuscis-acting_regulatorPredictedHowden_BP_et_al.2013
srn_3550Teg75Teg75_sRNA282RNAseqconserved_in_StaphylococcusPredictedBeaume_et_al._2010
srn_3570sRNA284sRNA284RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_3580SprA1SprA1_IGR1520_Teg8_sRNA285Northern_BlotSayed_et_al,_2011conserved_in_StaphylococcusType_I_Toxin-antitoxin_modulePichon_et_Felden._2005,_Roberts_et_al.2006,_Beaume_et_al.2010,_Sayed_et_al_2011,_Sayed_et_al_2012_and_Howden_BP_et_al.2013
srn_3590sprAs1SprA1as_Teg152_sRNA286Northern_BlotSayed_et_al,_2011conserved_in_S._aureusType_I_Toxin-antitoxin_moduleBeaume_et_al.2010,_Sayed_N_et_al.2011_and_Howden_BP_et_al.2013
srn_3600SprBSprB_Teg9_IGR18Northern_Blotconserved_in_S._aureusPredictedPichon_et_Felden._2005_and_Beaume_et_al.2010
srn_3610SprCSprC_Teg10_IGR18Northern_Blotconserved_in_S._aureusPichon_et_Felden._2005_and_Beaume_et_al.2010
srn_3660Sau6515Sau6515Northern_Blotconserved_in_S._aureusPredictedAbu-Qatouseh_et_al.2010
srn_3700Teg142sRNA291_Teg142RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3710Sau6799Sau6799Northern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_3740Sau6492Sau6492RNAseqconserved_in_S._aureusPredictedAbu-Qatouseh_et_al.2010
srn_3765srn_3765srn_3765Northern_Blotconserved_in_S._aureusPredictedBronsard_et_al.2017
srn_3770Teg122Teg122_sRNA303RNAseqconserved_in_S._aureus_and_predicted_in_S._epidermidis_and_S._pasteuriBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3780Teg13Teg13_sRNA302RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3790sRNA301sRNA301RNAseqconserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesPredictedHowden_BP_et_al.2013
srn_3800sprDSprD_Teg14_sRNA300Northern_Blotsbi_mRNAChabelskaya_et_al,_2010conserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesTrans-acting_RNAVirulence,_down_regulated_Immune_evasion_Sbi_proteinPichon_et_Felden._2005_and_Beaume_et_al.2010
srn_3820SprXSprX_sRNA299_RsaOR_ssr6_teg15_IGR12Northern_BlotYabj-spoVG_mRNAsEyraud_et_al,_2014conserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesTrans-acting_RNARegulate_SpoVG_protein_regulator_involved_in_antibiotic_resistancePredictedBohn_et_al.2010,_Beaume_et_al.2010,_Howden_BP_et_al.2013_and_Eyraud_A_et_al.2014
srn_3820.1SprX2RsaOR_SprX2_ssr6_teg15_IGR12RNAseqconserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesCDSPredictedBohn_et_al.2010,_Beaume_et_al.2010,_Howden_BP_et_al.2013_and_Eyraud_A_et_al.2014
srn_3830sprF1sprF1_IGR1644_Teg154_sRNA309Northern_BlotPinel-Marie_et_al,_2014conserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesType_I_Toxin-antitoxin_modulePichon_et_Felden._2005,Roberts_et_al.2006,_Beaume_et_al.2010,_Pinel-Marie_et_al.2014_and_Howden_BP_et_al.2013
srn_3840sprG1sprG1_sRNA310Northern_BlotPinel-Marie_et_al,_2014conserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesType_I_Toxin-antitoxin_moduleYESPichon_et_Felden._2005,_Pinel-Marie_et_al.2014_and_Howden_BP_et_al.2013
srn_3850Teg123Teg123_sRNA294RNAseqconserved_in_S._aureus_and_predicted_in_S._lugdunensis_and_Staphylococcus_BacteriophagesBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_3860sRNA315sRNA315RNAseqconserved_in_S._aureus_and_predicted_in_Staphylococcus_phage_BacteriophagesHowden_BP_et_al.2013
srn_3870sRNA296sRNA296RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_3910RNAIIIRNAIII_sRNA317Northern_Blot_RT-PCRhla,_rot,_coa,_spa,_sbi,_SA1000,_SA2353,_LytM,LtaS_map_mRNAsBenito_et_al,_2000conserved_in_StaphylococcusTrans-acting_and_coding_RNAEffector_of_quorum_sensing,_encodes_delta-hemolysinYESNovick_RP_et_al.1993_Morfeldt_et_al,_1995,_Boisset_et_al,_2007,_Chevalier_et_al,_2010,_Liu_et_al,_2011,_Chunhua_M,_Howden_BP_et_al.2013_Chabelskaya_et_al,_2014_and_ Yan_et_al.2014
srn_3950Teg16Teg16_sRNA321RNAseqconserved_in_S._aureus_and_predicted_in_S._warneri_SG1_S._pasteuri_SP1Beaume_et_al.2010,_Howden_BP_et_al.2013
srn_3970Sau6929Sau6929RNAseqconserved_in_S._aureusPredictedAbu-Qatouseh_et_al._2010
srn_4000sRNA326sRNA326RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_4010sRNA327sRNA327RNAseqconserved_in_StaphylococcusTrans-encoded_RNAPredictedHowden_BP_et_al.2013
srn_4015tsr31tsr31Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteusCarroll_et_al._2016
srn_4050artRartRNorthern_BlotartT_mRNAconserved_in_S._aureusPredictedXue_et_al,_2013
srn_4060Sau6723Sau6723RNAseqconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_4090sprF3Teg19a_sRNA332_SprF3Northern_Blotconserved_in_S._aureusPredicted_Type_I_Toxin-antitoxin_moduleBeaume_et_al.2010,_Howden_BP_et_al.2013_and_Pinel-Marie_et_al.2014
srn_4100sprG3Teg102_Teg19b_sRNA333_sprG3Northern_Blotconserved_in_StaphylococcusPredicted_Type_I_Toxin-antitoxin_moduleBeaume_et_al.2010,_Howden_BP_et_al.2013_and_Pinel-Marie_et_al.2014
srn_4110sRNA335sRNA335RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_4120Teg20Teg20_sRNA336RNAseqconserved_in_S._aureus_and_predicted_in_S._epidermidis_S._lugdunensisPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4160Sau25Sau25_sRNA340RNAseqconserved_in_StaphylococcusAbu-Qatouseh_et_al._2010_and_Howden_BP_et_al.2013
srn_4170Sau23Sau23RNAseqconserved_in_S._aureusAbu-Qatouseh_et_al._2010
srn_4190sRNA342sRNA342RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_4205tsr32tsr32RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_4220sRNA345sRNA345RNAseqconserved_in_S._aureus_and_predicted_in_S._pasteuri_SP1_S._warneri_SG1_and_S._pseudointermediusHowden_BP_et_al.2013
srn_4260Sau30Sau30_SSR154_sRZINorthern_Blotconserved_in_S._aureusAbu-Qatouseh_et_al.2010
srn_4290sRNA348sRNA348RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_4300sRNA349sRNA349RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_4325tsr33tsr33Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteusCarroll_et_al._2016
srn_4330Teg36asTeg36as_sRNA351RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4340Teg23Teg23_sRNA352RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4390rsaOGRsaOG_sRNA356_RsaI_Teg24Northern_Blotconserved_in_StaphylococcusGeissmann_T_et_al.2009,_Marchais_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4420Teg25Teg25_sRNA359RNAseqconserved_in_Staphylococcus_and_predicted_in_Bacillus_anthracis_CDC684PredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4440sRNA361sRNA361RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_4460Teg26Teg26_sRNA362RT-qPCRconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4470RsaX28ssr42_RsaX28_Teg27_sRNA363RNAseqconserved_in_S._aureusGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4520RsaX20RsaX20_Teg128_Teg130_sRNA367RNAseqconserved_in_S._aureusPredictedGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4530sprAs2primesRNA369RNAseqconserved_in_S._aureusPredicted_copy_of_sprAs1Howden_BP_et_al.2013
srn_4540sprAs2sRNA370RNAseqconserved_in_S._aureusPredicted_copy_of_sprAs1Howden_BP_et_al.2013
srn_4550sprA2IGR2049_IGR8bis_Teg26as_sRNA371RNAseqconserved_in_S._aureusPredicted_copy_of_sprA1Howden_BP_et_al.2013
srn_4570Teg27ssr42_Teg27as_Teg27_sRNA373RNAseqconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4590Teg28Teg28_sRNA375RT-qPCRconserved_in_S._aureusBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4610sRNA377sRNA377RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_4635S1077srn_4635_S1077Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteusPredictedMader_et_al._2016_Bronsard_et_al.2017
srn_4665tsr35tsr35RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusPredictedCarroll_et_al._2016
srn_4666tsr36tsr36RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusPredictedCarroll_et_al._2016
srn_4670RsaOTssr43_RsaOT_RsaON_Teg29_sRNA381Northern_Blotconserved_in_S._aureusPredictedBohn_et_al.2010,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_4705tsr37tsr37RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusPredictedCarroll_et_al._2016
srn_4740sprA3sprA3_IGR2125RNAseqconserved_in_S._aureus_and_predicted_in_S._epidermidisPichon_et_Felden._2005
srn_4770sRNA385sRNA385RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_4780Teg31Teg31_sRNA386RNAseqconserved_in_S._aureus_and_predicted_in S_argenteus_S_pasteuri_and_S_warneriBeaume_et_al._2010
srn_4830Sau6072Sau6072_sRNA389Northern_Blotconserved_in_StaphylococcusPredictedAbu-Qatouseh_et_al.2010_and_Howden_BP_et_al.2013
srn_4840RsaOVRsaOV_Sau40_sRZVRNAseqconserved_in_S._aureus_and_predicted_in S_argenteusTrans-encoded_sRNAsBohn_et_al._2010_and_Abu-Qatouseh_et_al._2010
srn_4840RsaOVRsaOV_Sau40_sRZVNorthern_Blotconserved_in_S._aureusBohn_et_al.2010_and_Abu-Qatouseh_et_al.2010
srn_4940sRNA396sRNA396RNAseqconserved_in_S._aureuscis-acting_regulatorPredictedHowden_BP_et_al.2013
srn_4950sRNA397sRNA397RNAseqconserved_in_S._aureus_and_predicted_in S_argenteustrans-encoded_RNAPredictedHowden_BP_et_al.2013
srn_4980Teg32Teg32_sRNA399RNAseqconserved_in_S._aureusBeaume_et_al._2010_and_Howden_BP_et_al.2013
srn_5000Sau13Sau13Northern_Blotconserved_in_S._aureusPredictedAbu-Qatouseh_et_al.2010
srn_5010Teg33Teg33_sRNA400RNAseqconserved_in_S._aureusPredictedBeaume_et_al.2010_and_Howden_BP_et_al.2013
srn_5020sRNA401sRNA401RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_5070RsaX25RsaX25_Teg141_sRNA406Northern_Blot_RNA_seqconserved_in_S._aureusGeissmann_T_et_al.2009,_Beaume_et_al.2010_and_Howden_BP_et_al.2013
srn_5075srn_5075srn_5075Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteusBronsard_et_al.2017
srn_5110sRNA411sRNA411RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusAntisensePredictedHowden_BP_et_al.2013
srn_9015tsr10tsr10RNAseqconserved_in_S._aureus_and_predicted_in S_argenteusCarroll_et_al._2016
srn_9320sRNA258sRNA258RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_9335tsr29tsr29RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_9335.1tsr29tsr29RNAseqconserved_in_S._aureusPredictedCarroll_et_al._2016
srn_9340sRNA287sRNA287RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_9340sRNA287sRNA287_S774Northern_Blotconserved_in_S._aureustrans-encoded_RNAHowden_BP_et_al.2013
srn_9342srn_9342srn_9342Northern_Blotconserved_in_S._aureus_and_Staphylococcus_BacteriophagesBronsard_et_al.2017
srn_9343srn_9343srn_9343RT-PCRconserved_in_S._aureus_and_predicted_in_ S_argenteus_and_Staphylococcus_Bacteriophagestrans-encoded_RNA_AntisensePredictedBronsard_et_al.2017
srn_9344srn_9344srn_9344Northern_Blotconserved_in_S._aureus_and_predicted_in_ S_argenteus_and_Staphylococcus_BacteriophagesBronsard_et_al.2017
srn_9345S808srn_9345_S808Northern_Blotconserved_in_S._aureus_and_predicted_in_ S_argenteus_S._lugdunensis_and_Staphylococcus_BacteriophagesMader_et.al_2016_Bronsard_et_al.2017
srn_9346srn_9346srn_9346RT-PCRconserved_in_S._aureus_and_predicted_in_ S_argenteus_S._lugdunensis_and_Staphylococcus_Bacteriophagestrans-encoded_RNA_AntisenseBronsard_et_al.2017
srn_9348srn_9348srn_9348Northern_Blotconserved_in_S._aureusPredictedBronsard_et_al.2017
srn_9349srn_9349srn_9349RT-PCRconserved_in_S._aureusBronsard_et_al.2017
srn_9360sRNA293sRNA293RNAseqconserved_in_S._aureus_and_predicted_in_Staphylococcus_BacteriophagesPredictedHowden_BP_et_al.2013
srn_9480sRNA334sRNA334RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_9490sRNA337sRNA337RNAseqconserved_in_S._aureusHowden_BP_et_al.2013
srn_9500sRNA368sRNA368RNAseqconserved_in_S._aureusPredictedHowden_BP_et_al.2013
srn_9525tsr26tsr26Northern_Blotconserved_in_S._aureus_and_predicted_in S_argenteustrans-encoded_RNA_AntisenseCarroll_et_al._2016
srn_9580tsr1tsr1RNAseqconserved_in_S._aureus_and_some_Staphylococcus_speciesCarroll_et_al._2016
srn_9590tsr2tsr2RNAseqconserved_in_S._aureus_and_some_Staphylococcus_speciesCarroll_et_al._2016
srn_9600tsr3tsr3RNAseqconserved_in_S._aureus_and_S_epidermidisCarroll_et_al._2016
srn_9610tsr4tsr4RNAseqconserved_in_StaphylococcusCarroll_et_al._2016
srn_9620tsr5tsr5RNAseqconserved_in_S._aureus_and_S_epidermidisCarroll_et_al._2016
srn_9630tsr30tsr30RNAseqconserved_in_S._aureus_and_predicted_in_Staphylococcus_Bacteriophages_and_ S_argenteusCarroll_et_al._2016
srn_9640srn_9640srn_9640RT-PCRconserved_in_S._aureustrans-encoded_RNA_AntisenseBronsard_et_al.2017
srn_9650srn_9650srn_9650Northern_Blotconserved_in_S._aureus_and_Staphylococcus_BacteriophagesPredictedBronsard_et_al.2017
srn_9660srn_9660srn_9660Northern_Blotconserved_in_S._aureus_and_Staphylococcus_BacteriophagesPredictedBronsard_et_al.2017
srn_9670srn_9670srn_9670Northern_Blotconserved_in_S._aureus_and_Staphylococcus_BacteriophagesBronsard_et_al.2017
srn_9671srn_9671srn_9671RT-PCRconserved_in_S._aureus_and_Staphylococcus_Bacteriophagestrans-encoded_RNA_AntisenseBronsard_et_al.2017
srn_9680srn_9680srn_9680Northern_Blotconserved_in_S._aureus_and_predicted_in_ S._lugdunensis_and_Staphylococcus_BacteriophagesPredictedBronsard_et_al.2017
srn_9681srn_9681srn_9681RT-PCRconserved_in_S._aureus_and_predicted_in_ S._lugdunensis_and_Staphylococcus_Bacteriophagestrans-encoded_RNA_AntisenseBronsard_et_al.2017
tmRNAtmRNAtmRNA_WAN014GIY_Teg150_ssrA_sRNA166Northern_Blotconserved_in_StaphylococcusTrans-acting_RNATrans-translation,_ribosome_rescuePredictedPichon_et_Felden_2005,_Roberts_et_al.2006,_Beaume_et_al.2010_and_Liu_et_al,_2010
Biogenouest IRISA INRIA Université de Rennes 1 Région Bretagne

Copyright © 2005-2010 Biogenouest® - Legal notice - Contact : Contact GenOuest