Staphylococcus pasteuri SP1

The prediction was done using a set of srn genes identified from SRD curated sRNAs.

Numbers of SRD’S predicted srn sequences =

subject_seq_id	identity	length	mismatch	gapopen	query_start	query_end	subject_start	subject_end	evalue	bitscore
tmRNA	92.22	360	26	2	1996710	1997068	1	359	1e-142	508
srn_1470_sRNA129	84.33	536	60	7	1771766	1772295	294	811	6e-141	503
srn_1470_sRNA129	84.72	504	59	6	1771838	1772335	294	785	2e-136	488
srn_1470_sRNA129	85.94	441	50	4	1771642	1772082	380	808	4e-128	460
srn_1470_sRNA129	84.30	433	56	4	1772054	1772480	294	720	1e-113	412
4.5S	95.14	247	10	2	1658610	1658855	1	246	2e-106	388
RNAseP	90.29	278	20	5	62466	62739	161	435	5e-97	357
srn_1480_sRNA130	86.32	329	39	2	1771910	1772232	281	609	7e-96	353
srn_1480_sRNA130	86.69	323	37	2	1771877	1772193	284	606	7e-96	353
srn_1480_sRNA130	84.75	341	34	5	1772126	1772460	281	609	1e-87	326
srn_3960_sRNA323	98.37	184	3	0	441775	441958	1	184	5e-87	324
srn_3960_sRNA323	98.37	184	3	0	573952	574135	1	184	5e-87	324
srn_3960_sRNA323	98.37	184	3	0	665868	666051	1	184	5e-87	324
srn_3960_sRNA323	98.37	184	3	0	1706728	1706911	184	1	5e-87	324
srn_3960_sRNA323	98.37	184	3	0	1663188	1663371	184	1	5e-87	324
srn_3910_RNAIII	80.73	467	44	31	541015	541459	1	443	2e-86	322
srn_4830_Sau6072	88.38	241	26	2	1092344	1092583	1	240	2e-76	289
srn_2130_rsaE	90.28	216	14	6	2165150	2165361	5	217	2e-72	276
srn_3320_sRNA264	85.83	240	25	9	271934	272166	1	238	1e-63	246
srn_2880_RsaOQ	80.29	350	49	20	2521538	2521877	9	348	1e-63	246
srn_0860_RsaOB	88.67	203	18	5	1562973	1563172	191	391	2e-62	243
srn_1940_sRNA165	84.93	219	31	2	1993470	1993687	9	226	7e-56	220
srn_3510_Teg74	89.02	173	11	5	387421	387587	131	301	6e-52	207
srn_3040_Sau50	92.41	145	11	0	88102	88246	1	145	6e-52	207
srn_3050_sRNA242	88.89	162	18	0	92037	92198	1	162	9e-50	200
srn_1140_Sau82	91.61	143	10	2	1661691	1661831	1	143	1e-48	196
srn_3550_Teg75	91.67	144	7	4	398162	398305	7	145	4e-48	195
srn_1640_rsaD	90.07	151	11	3	1851671	1851819	26	174	2e-47	193
srn_1410_Teg77	90.20	153	8	6	1732911	1733060	1	149	2e-47	193
srn_0010_sRNA412	84.08	201	25	7	1490210	1490407	197	1	7e-46	187
srn_4770_sRNA385	83.33	204	31	3	1068762	1068963	130	332	3e-45	185
srn_3950_Teg16	81.78	236	26	13	557989	558218	1	225	3e-44	182
srn_4430_sRNA360	83.87	186	30	0	847902	848087	7	192	4e-43	178
srn_1210_sRNA106	86.79	159	20	1	1680119	1680276	1	159	2e-42	176
srn_3310_sRNA263	90.37	135	10	3	270113	270245	6	139	6e-42	174
srn_4010_sRNA327	92.44	119	7	2	627883	628000	75	192	3e-40	169
srn_4390_rsaOG	93.69	111	6	1	824849	824958	1	111	3e-39	165
srn_2030_Teg52	94.44	108	5	1	2031479	2031585	7	114	3e-39	165
srn_1250_sRNA110	86.67	150	19	1	1694672	1694820	32	181	3e-39	165
srn_4160_Sau25	89.83	118	7	5	574520	574633	1	117	1e-33	147
srn_4160_Sau25	90.91	110	5	5	1706237	1706343	108	1	2e-32	143
srn_4160_Sau25	91.51	106	5	4	666436	666538	1	105	2e-32	143
srn_4160_Sau25	91.51	106	5	4	1662701	1662803	105	1	2e-32	143
srn_4160_Sau25	91.26	103	5	4	442343	442442	1	102	7e-31	137
srn_3080_Teg66	86.67	135	12	4	100535	100663	1	135	4e-33	145
srn_4140_sRNA338	100.00	68	0	0	438634	438701	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	570858	570925	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	662816	662883	1	68	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	1709938	1710005	68	1	2e-27	126
srn_4140_sRNA338	100.00	68	0	0	1666445	1666512	68	1	2e-27	126
srn_3150_Teg83	90.82	98	4	5	146843	146937	5	100	2e-27	126
srn_2330_Sau11	92.86	84	5	1	2237329	2237412	71	153	7e-26	121
srn_3020_Teg65	92.68	82	6	0	62509	62590	1	82	3e-25	119
srn_2620_Teg61	85.45	110	14	2	2396492	2396599	1	110	1e-23	113
srn_1420_Sau60	89.77	88	7	2	1734778	1734864	1	87	4e-23	111
srn_0930_Teg76	93.42	76	4	1	1600286	1600361	4	78	4e-23	111
srn_3470_sRNA274	95.59	68	2	1	354647	354713	3	70	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1665234	1665291	1	58	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	1708727	1708784	1	58	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	664037	664094	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	572079	572136	58	1	6e-22	108
srn_1320_sRNA117	100.00	58	0	0	439855	439912	58	1	6e-22	108
srn_3480_sRNA275	88.64	88	8	2	338467	338553	302	388	2e-21	106
srn_3480_sRNA275	94.44	54	2	1	1752087	1752140	161	213	4e-14	82.4
srn_0890_sRNA71	89.41	85	8	1	1585155	1585239	4	87	2e-21	106
srn_9470_sRNA322	100.00	55	0	0	439851	439905	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	572075	572129	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	664033	664087	1	55	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	1708734	1708788	55	1	3e-20	102
srn_9470_sRNA322	100.00	55	0	0	1665241	1665295	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1665232	1665286	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	1708725	1708779	1	55	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	664042	664096	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	572084	572138	55	1	3e-20	102
srn_9200_sRNA101	100.00	55	0	0	439860	439914	55	1	3e-20	102
srn_4220_sRNA345	96.72	61	2	0	744786	744846	27	87	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	439853	439907	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	572077	572131	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	664035	664089	1	55	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1708732	1708786	55	1	3e-20	102
srn_4150_sRNA339	100.00	55	0	0	1665239	1665293	55	1	3e-20	102
srn_4780_Teg31	82.73	110	19	0	1068826	1068935	3	112	3e-19	99.0
srn_4300_sRNA349	91.30	69	4	2	2131995	2132063	207	141	2e-17	93.5
srn_4300_sRNA349	91.30	69	4	2	2131689	2131757	207	141	2e-17	93.5
srn_4300_sRNA349	94.83	58	2	1	1752087	1752144	206	150	2e-16	89.8
srn_3190_Teg68	82.69	104	15	2	215408	215509	73	175	2e-16	89.8
srn_1460_sRNA128	100.00	47	0	0	1746769	1746815	1	47	8e-16	87.9
srn_3770_Teg122	97.87	47	0	1	512608	512653	4	50	1e-13	80.5
srn_1400_sRNA124	97.73	44	1	0	1731552	1731595	1	44	2e-12	76.8
srn_2320_sRNA195	88.71	62	5	2	338633	338693	154	94	6e-12	75.0
srn_1450_Sau6057	100.00	38	0	0	1746083	1746120	20	57	8e-11	71.3